import numpy as np import networks.geometry.segment_tools as segment_tools from scipy import interpolate from math import sqrt def curve(target_points, resolution=40): """ Returns a list of spaced points that approximate a smooth curve following target_points. https://stackoverflow.com/questions/18962175/spline-interpolation-coefficients-of-a-line-curve-in-3d-space """ # Remove duplicates. Curve can't intersect itself points = tuple(map(tuple, np.array(target_points))) points = sorted(set(points), key=points.index) # Change coordinates structure to (x1, x2, x3, ...), (y1, y2, y3, ...) (z1, z2, z3, ...) coords = np.array(points, dtype=np.float32) x = coords[:, 0] y = coords[:, 1] z = coords[:, 2] # Compute tck, u = interpolate.splprep([x, y, z], s=3, k=2) x_knots, y_knots, z_knots = interpolate.splev(tck[0], tck) u_fine = np.linspace(0, 1, resolution) x_fine, y_fine, z_fine = interpolate.splev(u_fine, tck) x_rounded = np.round(x_fine).astype(int) y_rounded = np.round(y_fine).astype(int) z_rounded = np.round(z_fine).astype(int) return [(x, y, z) for x, y, z in zip( x_rounded, y_rounded, z_rounded)] def curvature(curve): """Get the normal vector at each point of the given points representing the direction in wich the curve is turning. https://stackoverflow.com/questions/28269379/curve-curvature-in-numpy Args: curve (np.array): array of points representing the curve Returns: np.array: array of points representing the normal vector at each point in curve array >>> curvature(np.array(([0, 0, 0], [0, 0, 1], [1, 0, 1]))) [[ 0.92387953 0. -0.38268343] [ 0.70710678 0. -0.70710678] [ 0.38268343 0. -0.92387953]] """ curve_points = np.array(curve) dx_dt = np.gradient(curve_points[:, 0]) dy_dt = np.gradient(curve_points[:, 1]) dz_dt = np.gradient(curve_points[:, 2]) velocity = np.array([[dx_dt[i], dy_dt[i], dz_dt[i]] for i in range(dx_dt.size)]) ds_dt = np.sqrt(dx_dt * dx_dt + dy_dt * dy_dt + dz_dt * dz_dt) tangent = np.array([1/ds_dt]).transpose() * velocity tangent_x = tangent[:, 0] tangent_y = tangent[:, 1] tangent_z = tangent[:, 2] deriv_tangent_x = np.gradient(tangent_x) deriv_tangent_y = np.gradient(tangent_y) deriv_tangent_z = np.gradient(tangent_z) dT_dt = np.array([[deriv_tangent_x[i], deriv_tangent_y[i], deriv_tangent_z[i]] for i in range(deriv_tangent_x.size)]) length_dT_dt = np.sqrt( deriv_tangent_x * deriv_tangent_x + deriv_tangent_y * deriv_tangent_y + deriv_tangent_z * deriv_tangent_z + 0.0001) normal = np.array([1/length_dT_dt]).transpose() * dT_dt return normal def offset(curve, distance, normals): if len(normals) != len(curve): raise ValueError( 'Number of normals and number of points in the curve do not match') # Offsetting offset_segments = [segment_tools.parallel( (curve[i], curve[i+1]), distance, normals[i]) for i in range(len(curve) - 1)] # Combining segments combined_curve = [] combined_curve.append(np.round(offset_segments[0][0]).tolist()) for i in range(0, len(offset_segments)-1): combined_curve.append(segment_tools.middle_point( offset_segments[i][1], offset_segments[i+1][0])) combined_curve.append(np.round(offset_segments[-1][1]).tolist()) return combined_curve def resolution_distance(target_points, spacing_distance): length = 0 for i in range(len(target_points) - 1): length += sqrt( ((target_points[i][0] - target_points[i + 1][0]) ** 2) + ((target_points[i][1] - target_points[i + 1][1]) ** 2) + ((target_points[i][2] - target_points[i + 1][2]) ** 2) ) return round(length / spacing_distance), length def simplify_segments(points, epsilon): if len(points) < 3: return points # Find the point with the maximum distance max_distance = 0 max_index = 0 end_index = len(points) - 1 for i in range(1, end_index): distance = get_distance(points[i], points[0]) if distance > max_distance: max_distance = distance max_index = i simplified_points = [] # If the maximum distance is greater than epsilon, recursively simplify if max_distance > epsilon: rec_results1 = simplify_segments(points[:max_index+1], epsilon) rec_results2 = simplify_segments(points[max_index:], epsilon) # Combine the simplified sub-results simplified_points.extend(rec_results1[:-1]) simplified_points.extend(rec_results2) else: # The maximum distance is less than epsilon, retain the endpoints simplified_points.append(points[0]) simplified_points.append(points[end_index]) return simplified_points